PSL101 1.0 Server Help

This server predicts the protein subcellular localization for Gram-negative bacteria.

TABLE OF CONTENT

INPUT
HOW TO SUBMIT
OUTPUT

INPUT

Please input the protein sequence in FASTA format. Single-letter representation of 20 amino acids is accepted (excluding B, X, and Z).
Please check your sequence before submitting to the program. The word following the character “>” is the identifier of the sequence.
The sequence ends if another line starting with a ”>” appears; this indicates the start of another sequence.

Here is an example:

>16131244
MSKVRLAIIGNGMVGHRFIEDLLDKSDAANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLVGERAITINRQEKVIHSSAGRTVFYDKLIMATGSYPWIPPIKGSDTQDCFVYRTIEDLNAIESCARRSKRGAVVGGGLLGLEAAGALKNLGIETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPRDKLATQCGLDVAPRGGIVINDSCQTSDPDIYAIGECASWNNRVFGLVAPGYKMAQVAVDHILGSENAFEGADLSAKLKLLGVDVGGIGDAHGRTPGARSYVYLDESKEIYKRLIVSEDNKTLLGAVLVGDTSDYGNLLQLVLNAIELPENPDSLILPAHSGSGKPSIGVDKLPDSAQICSCFDVTKGDLIAAINKGCHTVAALKAETKAGTGCGGCIPLVTQVLNAELAKQGIEVNNNLCEHFAYSRQELFHLIRVEGIKTFEELLAKHGKGYGCEVCKPTVGSLLASCWNEYILKPEHTPLQDSNDNFLANIQKDGTYSVIPRSPGGEITPEGLMAVGRIAREFNLYTKITGSQRLAMFGAQKDDLPEIWRQLIEAGFETGHAYAKALRMAKTCVGSTWCRYGVGDSVGLGVELENRYKGIRTPHKMKFGVSGCTRECSEAQGKDVGIIATEKGWNLYVCGNGGMKPRHADLLAADIDRETLIKYLDRFMMFYIRTADKLTRTAPWLENLEGGIDYLKAVIIDDKLGLNAHLEEEMARLREAVLCEWTETVNTPSAQTRFKHFINSDKRDPNVQMVPEREQHRPATPYERIPVTLVEDNA
>16128916
MSLISMHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNREQGLDDGRIIYEQDLIVARLQQDPPRNVEGSVYDFVAEGIEEQAEYLKRYHDISRLVMNDPSEKNLNELAKVQEQLDHHNLWQLENRINEVLAQLGLDPNVALSSLSGGWLRKAALGRALVSNPRVLLLDEPTNHLDIETIDWLEGFLKTFNGTIIFISHDRSFIRNMATRIVDLDRGKLVTYPGNYDQYLLEKEEALRVEELQNAEFDRKLAQEEVWIRQGIKARRTRNEGRVRALKAMRRERGERREVMGTAKMQVEEASRSGKIVFEMEDVCYQVNGKQLVKDFSAQVLRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHVGTKLEVAYFDQHRAELDPDKTVMDNLAEGKQEVMVNGKPRHVLGYLQDFLFHPKRAMTPVRALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELIDSYQGTVLLVSHDRQFVDNTVTECWIFEGGGKIGRYVGGYHDARGQQEQYVALKQPAVKKTEEAAAAKAETVKRSSSKLSYKLQRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYLEALKNGG

HOW TO SUBMIT

Click "Submit" once you have pasted the sequence(s) into the textbox.

OUTPUT

Short Output Description

Protein ID: 16131244
Predicted localization: Cytoplasmic
#
Protein ID: 16128916
Predicted localization: Cytoplasmic
#

Detailed output description

Protein ID: 16131244
----------------------------------------------------------------------
PSLsse prediction:

SSE_Similarity: 95.147%
Matched_Protein: 118393
Predicted localization of PSLsse: Cytoplasmic
----------------------------------------------------------------------
PSL101 prediction:

Predicted localization of PSL101: Cytoplasmic
----------------------------------------------------------------------
Final hybrid prediction from PSLsse: Cytoplasmic
#
Protein ID: 16128916
----------------------------------------------------------------------
PSLsse prediction:

SSE_Similarity: 70.815%
Matched_Protein: 6166548
Predicted localization of PSLsse: Inner membrane
----------------------------------------------------------------------
PSL101 prediction:

Predicted localization of PSL101: Cytoplasmic
----------------------------------------------------------------------
Final hybrid prediction from PSL101: Cytoplasmic
#